Questions tagged [neuroimaging]

For questions about techniques to directly or indirectly image the structure, function, or pharmacology of the brain.

Filter by
Sorted by
Tagged with
1
vote
0answers
46 views

How to cope with the problem of noise in fMRI?

The sounds and noises that a typical MRI scanner produces are problematic for several reasons: they give - annoying as they are - a strong feel of uncomfortableness to any subject or patient they are ...
4
votes
1answer
377 views

During body-scan ('sweeping') meditation, what does brain-imaging (e.g. fMRI) look like?

I do not know how extensive body scans have been studied with brain-imaging techniques, e.g. fMRI. Body scan is a meditation technique developed by Jon Kabat-Zinn. It was derived from a meditation ...
1
vote
2answers
93 views

Can we identify specific emotions on the basis of fMRI scans?

I am looking for fMRI studies in which the emotional response of a person listening to music is visible in the fMRI scans, paralleled by a retrospective think aloud report of the person describing his/...
1
vote
0answers
54 views

Single person with largest number of fMRI scans [closed]

Is there a known single test person of whom the largest number of fMRI scans (while performing different tasks) have been recorded? Are these publicly available? I assume some overarching patterns ...
2
votes
1answer
76 views

Have the effects of MRIs and other electromagnetic devices on human psychology been studied?

What are the effects of MRIs and other electromagnetic devices on the human brain? Naturally they could move metals to or through the brain cell's membrane. I can also see the experience of being in a ...
1
vote
0answers
30 views

How does processing of T1 images affect tractography after registering the DWI to T1?

At the moment I believe that registering (aligning) Diffusion Weighted Images (DWI) to T1 images only allows for the DWI to have a parcellation basis, and otherwise it does not give much information. ...
4
votes
2answers
2k views

MRI images upside-down in FSLVIEW

I'm visualizing structural data in FSLVIEW, but the sagittal and coronal planes are both upside-down / not in the conventional orientation, i.e. rotated by 90º and 180º. I understand that this upside-...
3
votes
1answer
65 views

Why the brain region with less activity is not more responsible for some action?

From my naive understanding, it seems that when people try to find correlations between a human action and a certain pattern of activity in the brain, they measure the brain activity with some device ...
1
vote
0answers
63 views

How to convert fmri brain volumes to brain graph [closed]

I am working with fMRI data of Alzheimer's Disease (AD) patients. I want to convert brain volumes to brain graph and then using different graph metrics, I want to classify the brain volumes in AD and ...
4
votes
1answer
468 views

where can i find preprocessed fmri data set for alzheimer's disease

I want to work on identification of Alzheimer's patients based on given fMRI data.Basically, I want to implement the following paper https://www.ncbi.nlm.nih.gov/pubmed/25907414. Where can I get ...
16
votes
3answers
1k views

Research suggesting conscious control over brain region activation?

Has there been any research proving, disproving, or exploring the concept of conscious activation of specific brain regions? To elaborate on this: I've read that performing processing tasks causes ...
3
votes
0answers
90 views

NiftyReg reg_resample results in strange artifacts when registering MNI-ICBM-152 atlas

I'm using NiftyReg for image registration, and I have several artifacts when applying the warp from a non-linear registering of de facto standard MNI-ICBM-152 atlas. Here are a few slices showing the ...
5
votes
2answers
2k views

Difference between reverse inference and decoding (e.g. MVPA) in fMRI

Reverse inference, i.e. the use of brain activation (fMRI) data to infer the engagement of a certain mental function, is heavily criticised (e.g., Poldrack 2011, Neuron). At the same time, decoding, ...
5
votes
1answer
906 views

Is it possible to detect the mental flow state with EEG?

I know that it is possible to detect "focus" with a consumer EEG with a single electrode and a reference point (ear clip), even without conductive gel, but is it possible to detect a flow state with ...
3
votes
1answer
1k views

LAURA/LORETA source localization in Matlab

Is there a Matlab toolbox for doing source localization using LAURA or sLORETA within Matlab (not requiring additional software like LORETA-KEY, etc.)?
5
votes
1answer
89 views

Is there a complete connectome of a minicolumn of the neocortex?

I know that there are projects that try to map brain connectivity. My question is whether there is a dataset available with the complete connectivity of just a single minicolumn of the neocortex. ...
3
votes
1answer
71 views

What are the main differences between the FreeSurfer volumetric approach and the statistical parametric mapping from SPM?

In modern research of brain volume and function there are two main players. FreeSurfer which is free of cost and open source and the older, but more frequently used, statistical parametric mapping ...
4
votes
0answers
44 views

Library (or manual creation) of ERP components

I'm looking to test some computational models using ERP components as inputs (eg. p300, n170) I'm wondering if there is an existing library anywhere that would have a bank of wave/component examples ...
5
votes
0answers
121 views

Is there a tangible benefit of synchronising the sample clock to the laser pulses in a resonant scanning two-photon microscope?

NI data acquisition cards offer a possibility of synchronising data acquisition with the pulses of a 80 MHz Ti:Sapphire laser. This supposedly helps improve the signal to noise ratio, since the true ...
2
votes
1answer
159 views

Finding the anterior comissure to set origin in a SPECT image using SPM/ISAS

I am learning how to use SPM and ISAS to analyze ictal and interictal SPECT. However I am stuck at a point of their tutorial. In the item 1.2 one has to set the origin for the SPECT image. That is, ...
3
votes
1answer
2k views

How many possible states does a brain have?

Suppose I have a box, inside of which is a light which can be either on or off: it has exactly two states. Suppose I wanted to take some "snapshot" of the state of this device, and store all the ...
2
votes
1answer
40 views

Where can I find good references about the neuronal connections in various areas in the cortex?

As an example, I would like to know which Brodmann areas innervate the layer IV of area 10 in the brain. To which degree are these connections known? What are good books or other kinds of resources ...
2
votes
2answers
1k views

How to install MARSBAR toolbox in SPM12?

I am trying to install MARSBAR toolbox into SPM12, but I am running into different problems. Initially they were all related to directory ownership and permissions (using Ubuntu 14.04), which I ...
2
votes
0answers
138 views

EEG electrode cluster selection

Is there a good review paper on electrode selection in EEG analysis to avoid the problem of double dipping (Kilner, 2013)? This is a well documented issue in neuroimaging (Kriegeskorte et al, 2009; ...
3
votes
1answer
76 views

Voltage sensitive dyes technique: What is the underlying measure?

I just discovered voltage sensitive dyes technique: I have seen that figures are labelled with dF/F0, what does it stands for?
9
votes
1answer
104 views

Open magnetic resonance imaging datasets on psychosis?

Are there any open magnetic resonance imaging datasets of normal and healthy adults (as controls) and psychotic subjects? Such as ADNI for Alzheimer's or OASIS for aging.
11
votes
2answers
576 views

What computerized EEG analysis algorithms are there?

I got a commercial-grade EEG headband and am trying to look at the data it outputs. The headband quantifies raw EEG signal from a single forehead dry sensor into a range of EEG bands (alpha, beta, etc)...
7
votes
2answers
1k views

EEG correlates of handedness

Can any one suggest a good article about features of EEG of left-handed people? I was surprised when find that there are only few old articles about it. I find only one new article by Propper, Ruth ...
3
votes
1answer
312 views

What is the best way to turn EEG scans in to 3D images?

I'm looking for the best way to turn standard EEG scans into 3D images of activity in the brain over the time of scanning, for example like the Glass Brain images or even connectome-style images. I ...
4
votes
1answer
362 views

Batch converting .img files to .mgz in FreeSurfer

I have a series of .img files from a previous analysis in SPM that Freesurfer (FS) cannot directly handle. FS comes with a conversion tool, the mri_convert command, but I am not able to make it run ...
0
votes
1answer
202 views

How to import images used to analysis in SPM to FreeSurfer

FreeSurfer uses the recon-all command to semi-automatically generate its statistics. This tool implies a certain directory structure in which the files with the images for the samples should be ...
0
votes
1answer
1k views

Structural neuroimaging processing with FreeSurfer or SPM?

I have a limited amount of time to analyse strucutural neuroimaging from a sample of patients. My objective is to simply extract volumes from selected fronto-parietal areas. I have no previous ...
2
votes
1answer
58 views

Have EEG signals in auditory speech perception task have ever been analyzed for correlation with auditory stimuli itself?

This can be useful for getting a better grip on understanding the link between actual stimuli, brain processing, and EEG data.
1
vote
0answers
129 views

What is the general frequency (or range of frequencies) of “sparks” in the human brain per minute and at what locations? [closed]

How many electrical sparks occur in the brain, on average, per minute and at what structures do they occur? For the "how many" figure, I would be happy to have ranges here from relaxed to excited ...
27
votes
1answer
3k views

Have the abilities of John Lorber's patients with limited cortical mass been further evaluated in adulthood?

Short of minor lesions or infarcts, most high-functioning adults have an intact cerebral cortex. Yet, a surprising result published anecdotally in Science in 1980 caused a lot of scientists to take ...
1
vote
1answer
121 views

Are there any studies that were able to localize Fusiform Face Area (FFA) for face processing using EEG source localization algorithms?

I am looking for references where people were able to collect 128-256 channel EEG data during face perception task and the map it onto FFA or OFA using source localization algorithms?
1
vote
0answers
53 views

Let's say I have an MRI scan of my brain. What exactly can I learn from it? [closed]

Asking this because I participated in an MRI study today at my local University, and the compensation will be an emailed 'picture of my brain'. Note that I intend this question to be catered towards ...
3
votes
1answer
150 views

What are the highest ranked neuroscience journals that use double-blind review process?

In terms of impact factor (for a lack of a better proxy), what are the highest ranked neuroscience journals that use double-blind review process? I would be submitting a paper that combines ...
1
vote
0answers
54 views

reliability of fmri and pet [closed]

While I admit that pet/frmri scanning is possibly reliable when measuring physical aspects of the body, I would like to know how reliable it is when measuring cognitive aspects e.g. emotion. How ...
3
votes
1answer
108 views

Slices and aquisition of fMRI

Is a slice obtained with functional MRI (fMRI) always 3-dimensional, i.e., x-y-z? I thought that a typical fMRI scan's total imaged volume would be 4D, i.e., made up of 3D slices plus time.
5
votes
0answers
30 views

Simultaneous DTI, structural MRI and 1H-MRS - Are there any examples of this?

I have been reading about recent articles relating to treatment resistant schizophrenia, and apparently there are a lack of studies using multimodal imaging. Initially I just thought that would be ...
7
votes
1answer
223 views

Why “fractional” anisotropy?

Why is Fractional Anisotropy (FA), a measure in diffusion tensor imaging, called "fractional"? I'd have thought "local", i.e. voxel-wise, would have been the correct way to qualify the anisotropy that ...
5
votes
0answers
414 views

What are the brain regions related to tinnitus shown in this figure?

I am interested in learning about the neural mechanisms behind tinnitus, and was wondering if someone could help me to name the parts of the brain on this image that show increased activity in ...
9
votes
1answer
572 views

How does glial cell activity influence fMRI, EEG signals?

Glial cells comprise about 80% of the cells in the human brain. But physiological models of EEG and fMRI often relate only to neuronal activity. How do glial cells affect large-scale imaging ...
9
votes
2answers
338 views

What happens in the brain when conscious awareness is changed during dreaming onset?

I've long been interested in dreaming and there's a peculiar phenomenon of the very start of the dreaming process. Different people experience it differently, but even for the same person there's ...
2
votes
2answers
267 views

Neurotransmitter control via biofeedback?

According to this thread, certain regions of the brain, and even some distributed activation patterns can be up/down regulated via bio-feedback. Is it possible in theory and is there any research ...
11
votes
3answers
216 views

What kinds of information can (and cannot) be extracted from connectome?

Several scientific projects are trying to map the connectome, such as The Human Connectome Project. The connectomes of other organisms, such as C. elegans, have been mapped already. Having an ...
6
votes
1answer
485 views

What does fMRI measure exactly

It is true that blood flows to wherever the brain is most activated and does fMRI measure the blood flow inside of the brain through oxygen content?
5
votes
2answers
641 views

Why is it hard to simulate a neuron?

I read a NY Times article about the European effort to simulate a human brain and the criticism regarding the (non-)feasibility of such an endeavor (not to mention the astronomical costs). In this ...
2
votes
1answer
160 views

Where do our memories get stored and how are they retrieved again? [closed]

In one of Karl Lashley's 1950 papers, it is pointed out that information is not stored locally in certain area of the brain. Instead, it's stored distributively over the structure of the brain. I'm ...