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I am working with The Virtual Brain (TVB) software and require SC and FC matrices as inputs. I have raw rs-fMRI data (T1-w and DTI). Can someone please suggest an end-to-end pipeline for pre-processing raw data and generating the SC and FC matrices?

I have already tried working with Empirical processing pipeline for TVB and Surface and Connectivity Reconstruction Imaging Pipeline for TVB Simulations. But both of them are not working. The first one is meant to be run on a high-performance cluster using the SLURM job scheduler.

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