I have a series of .img files from a previous analysis in SPM that Freesurfer (FS) cannot directly handle.
FS comes with a conversion tool, the mri_convert command, but I am not able to make it run iteratively over all the files in the same directory. I found a mention about the --sdcmlist argument online, however I am not figuring out the proper syntax for it.
When I run:
mri_convert --sdcmlist 000123_1_4.img 000123_1_4.mgz
mri_convert: missing output volume name
Would anyone suggest a way of going about these conversions?